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kircherlab / IGVF_MPRA_quantification Public

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feat: new bcalm and mpralib#8

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visze wants to merge 11 commits intomasterkircherlab/IGVF_MPRA_quantification:masterfrom

feat/new_BCalmkircherlab/IGVF_MPRA_quantification:feat/new_BCalmCopy head branch name to clipboard

Conversation Commits11 (11)Checks Files changed

Open

feat: new bcalm and mpralib#8
visze wants to merge 11 commits intomasterfrom
feat/new_BCalm

Commits

Commits on Mar 2, 2026

udpating new bcam
visze
committed
refactor: remove CodeQL initialization step from security workflow
visze
committed
style: format code for better readability in common.smk and elements.smk
visze
committed
refactor: remove security workflow for CodeQL analysis
visze
committed
style: update linting arguments for better readability in main.yml
visze
committed

Commits on Mar 4, 2026

Using new bcalmand mpralib
visze
committed
refactor: update mpralib commands to use 'combine' for element and variant processing
visze
committed
style: add r-argparse dependency to bcalm.yaml
visze
committed
chore: update mpralib version to 0.10.2 in mpralib.yaml
visze
committed

Commits on Mar 5, 2026

feat: add mpra_treat function for processing MPRASet objects
visze
committed
chore: update mpralib version to 0.10.3 in mpralib.yaml
visze
committed

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