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test(pre-commit): exclude gen-project artefact failures we cannot control #265

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amc-corey-cox merged 1 commit into from
Aug 10, 2026
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test(pre-commit): exclude gen-project artefact failures we cannot control #265

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12 changes: 12 additions & 0 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
@@ -1,14 +1,26 @@
default_language_version:
python: python3

# Note: the `exclude` patterns below cover `make gen-project` outputs written
# into linkml_model/ which we do not control. Artefacts copied verbatim from the
# LinkML generators, which emit trailing whitespace and inconsistent final
# newlines (e.g. the bare "// " comment line in protobuf/meta.proto). Native
# sources stay covered: model/schema/, model/docs/, linkml_files.py, etc.

repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v6.0.0
hooks:
- id: end-of-file-fixer
exclude: &generated-artefacts |
(?x)^linkml_model/(
(excel|graphql|jsonld|jsonschema|owl|prefixmap|protobuf|rdf|shacl|shex|sqlddl|sqlschema)/
|(annotations|array|datasets|extensions|mappings|meta|types|units|validation)\.py$
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- id: check-yaml
- id: check-toml
- id: trailing-whitespace
exclude: *generated-artefacts

- repo: https://github.com/codespell-project/codespell
rev: v2.4.1
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