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1. patchology patchology Public

   A lightweight whole slide image tiling repo with tissue detection, artifact removal and square or hexagonal tile grids powered by openslide and fastslide as backend for H&E images

   Python 2

2. pathotrain pathotrain Public

   Wholesome training framework for digital pathology that covers segmentation, detection, image synthesis, self-supervised learning, VLM, CLIP with SOTA models for the GPU-poor

   Python 2

3. pathoinfer pathoinfer Public

   Whole-slide image inference for pathology: stitches tile predictions into seamless slide-level outputs, parquet and low-res image overlay. ONNX/TensorRT runtimes, Triton and vLLM serving. Works wit…

   Python 2

4. Gland-Segmentation Gland-Segmentation Public

   Gland segmentation task with GlaS 2015 dataset using UNet model.

   Jupyter Notebook 28 4

5. Deep-Attention-Network-for-BraTS20 Deep-Attention-Network-for-BraTS20 Public

   Deep Supervised Attention Networks for Pixel-wise Brain Tumor Segmentation. Affiliated with Data and Knowledge Engineering Group, Faculty of Computer Science, OVGU Magdeburg, Germany.

   Jupyter Notebook 6 2

6. MasterThesis MasterThesis Public

   Classification of Clinically Significant Prostate Cancer with 3D Multiparametric MRI with Deep Metric Learning.

   Jupyter Notebook 7